Variant report

Variant	rs72807753
Chromosome Location	chr2:56078344-56078345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3791678	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55818621	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55990801	1.00[EUR][1000 genomes]
rs59265286	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72805677	1.00[AMR][1000 genomes]
rs72807766	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807767	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807770	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807773	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807774	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807775	1.00[AMR][1000 genomes]
rs72811708	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72811720	1.00[AMR][1000 genomes]
rs72811729	1.00[AMR][1000 genomes]
rs72811739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56066800-56082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:56070600-56078400	Weak transcription	Ovary	ovary
3	chr2:56071400-56084000	Weak transcription	HSMM	muscle
4	chr2:56071600-56082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:56071600-56082600	Weak transcription	NHEK	skin
6	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:56071800-56084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:56072000-56082800	Weak transcription	Osteobl	bone
9	chr2:56077000-56079000	Enhancers	A549	lung
10	chr2:56077400-56078400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:56077600-56079000	Enhancers	Fetal Lung	lung
12	chr2:56078200-56079000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:56078200-56082600	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links