Variant report

Variant	rs55990801
Chromosome Location	chr2:56028272-56028273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs3791678	0.86[EUR][1000 genomes]
rs55818621	0.86[EUR][1000 genomes]
rs59265286	0.86[EUR][1000 genomes]
rs72807753	1.00[EUR][1000 genomes]
rs72807766	0.86[EUR][1000 genomes]
rs72807767	0.86[EUR][1000 genomes]
rs72807770	0.86[EUR][1000 genomes]
rs72807773	0.86[EUR][1000 genomes]
rs72807774	0.86[EUR][1000 genomes]
rs72811708	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56027800-56029600	Enhancers	Hela-S3	cervix
2	chr2:56027800-56029800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:56028000-56029800	Enhancers	Fetal Brain Female	brain
4	chr2:56028000-56030000	Enhancers	Fetal Brain Male	brain
5	chr2:56028200-56030000	Enhancers	A549	lung
6	chr2:56028200-56030400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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