Variant report

Variant	rs72818059
Chromosome Location	chr10:90019504-90019505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72818058	0.86[AMR][1000 genomes]
rs72818060	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818063	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818068	0.81[AMR][1000 genomes]
rs72818069	0.81[AMR][1000 genomes]
rs72818070	0.81[AMR][1000 genomes]
rs72818071	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90014200-90028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:90014400-90019800	Weak transcription	GM12878-XiMat	blood
3	chr10:90014600-90019800	Weak transcription	Dnd41	blood
4	chr10:90014600-90025600	Weak transcription	Osteobl	bone
5	chr10:90015000-90020200	Weak transcription	HMEC	breast
6	chr10:90015200-90020200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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