Variant report

Variant	rs72818070
Chromosome Location	chr10:90034545-90034546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72818057	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818059	0.81[AMR][1000 genomes]
rs72818060	0.81[AMR][1000 genomes]
rs72818062	0.81[AMR][1000 genomes]
rs72818063	0.81[AMR][1000 genomes]
rs72818067	0.81[AMR][1000 genomes]
rs72818068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72818070	RP11-57C13.3	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90028600-90034800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:90031400-90041200	Weak transcription	Fetal Stomach	stomach
3	chr10:90032000-90034800	Enhancers	Dnd41	blood
4	chr10:90032000-90038800	Weak transcription	Thymus	Thymus
5	chr10:90032000-90039200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:90032000-90040600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:90032000-90042000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:90032400-90034800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:90032400-90034800	Enhancers	GM12878-XiMat	blood
10	chr10:90032400-90038400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:90032400-90041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:90032600-90041200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:90032800-90038800	Weak transcription	Fetal Thymus	thymus
14	chr10:90032800-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:90032800-90042400	Weak transcription	Right Atrium	heart
16	chr10:90033000-90038000	Weak transcription	NH-A	brain
17	chr10:90033000-90038600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:90033000-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:90033600-90038600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:90033600-90039000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:90034200-90038600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:90034400-90038200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links