Variant report

Variant	rs72818069
Chromosome Location	chr10:90032594-90032595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72818057	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72818059	0.81[AMR][1000 genomes]
rs72818060	0.81[AMR][1000 genomes]
rs72818062	0.81[AMR][1000 genomes]
rs72818063	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72818067	0.81[AMR][1000 genomes]
rs72818068	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818071	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs72818069	RP11-57C13.3	cis	Whole Blood	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90026800-90034000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:90028600-90034800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90029600-90032800	Enhancers	Fetal Thymus	thymus
4	chr10:90029800-90032800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:90029800-90032800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:90029800-90032800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:90029800-90033000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr10:90030000-90032600	Enhancers	Osteobl	bone
9	chr10:90030200-90032600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:90030400-90033000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr10:90030800-90032800	Enhancers	Adipose Nuclei	Adipose
12	chr10:90031400-90041200	Weak transcription	Fetal Stomach	stomach
13	chr10:90031600-90032600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:90031600-90033000	Enhancers	NH-A	brain
15	chr10:90031600-90033400	Weak transcription	Fetal Lung	lung
16	chr10:90031600-90033600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:90031600-90033600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:90031600-90034200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:90031800-90032600	Weak transcription	Lung	lung
20	chr10:90031800-90032600	Weak transcription	Right Atrium	heart
21	chr10:90031800-90032800	Enhancers	NHDF-Ad	bronchial
22	chr10:90031800-90033000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:90031800-90033200	Weak transcription	Primary B cells from cord blood	blood
24	chr10:90031800-90033200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:90032000-90032800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:90032000-90034200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:90032000-90034800	Enhancers	Dnd41	blood
28	chr10:90032000-90038800	Weak transcription	Thymus	Thymus
29	chr10:90032000-90039200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:90032000-90040600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:90032000-90042000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:90032400-90034800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:90032400-90034800	Enhancers	GM12878-XiMat	blood
34	chr10:90032400-90038400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:90032400-90041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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