Variant report

Variant	rs72819225
Chromosome Location	chr10:93300313-93300314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:93300232-93300857	SK-N-SH	brain:	n/a	chr10:93300259-93300267
2	MAZ	chr10:93300313-93300864	Hela-S3	cervix:	n/a	n/a
3	NFIC	chr10:93300280-93300895	SK-N-SH	brain:	n/a	n/a
4	BATF	chr10:93300306-93300690	GM12878	blood:	n/a	n/a
5	TFAP2A	chr10:93300310-93300956	Hela-S3	cervix:	n/a	chr10:93300629-93300644
6	USF2	chr10:93300277-93300857	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
RPS27P1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10881918	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881919	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11186608	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186610	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12246270	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12246543	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12255223	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12256369	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12260868	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933659	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933660	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933661	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933662	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933663	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55753810	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55785441	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56007503	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068979	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93296600-93300400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:93296600-93300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:93296600-93302000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:93296800-93300400	Weak transcription	Aorta	Aorta
6	chr10:93297000-93301200	Weak transcription	Osteobl	bone
7	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
9	chr10:93297200-93300800	Weak transcription	Fetal Brain Male	brain
10	chr10:93297200-93300800	Weak transcription	NHLF	lung
11	chr10:93297200-93301400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:93297200-93302000	Weak transcription	Fetal Kidney	kidney
13	chr10:93297400-93300400	Weak transcription	Fetal Stomach	stomach
14	chr10:93297600-93301800	Weak transcription	Ovary	ovary
15	chr10:93298400-93301200	Weak transcription	Liver	Liver
16	chr10:93299400-93300600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93300000-93302800	Enhancers	Hela-S3	cervix
19	chr10:93300000-93304200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
21	chr10:93300200-93300800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr10:93300200-93301000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:93300200-93301200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:93300200-93302200	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links