Variant report

Variant	rs56007503
Chromosome Location	chr10:93300646-93300647
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr10:93300349-93300719	SK-N-SH	brain:	n/a	n/a
2	GTF2F1	chr10:93300320-93300964	Hela-S3	cervix:	n/a	n/a
3	STAT3	chr10:93300368-93300935	Hela-S3	cervix:	n/a	n/a
4	EP300	chr10:93300381-93301107	Hela-S3	cervix:	n/a	n/a
5	YY1	chr10:93300535-93300723	K562	blood:	n/a	n/a
6	TCF12	chr10:93300232-93300857	SK-N-SH	brain:	n/a	chr10:93300259-93300267
7	MAZ	chr10:93300313-93300864	Hela-S3	cervix:	n/a	n/a
8	NFYA	chr10:93300485-93300726	Hela-S3	cervix:	n/a	n/a
9	MAX	chr10:93300391-93300961	Hela-S3	cervix:	n/a	n/a
10	TCF7L2	chr10:93300324-93302257	Hela-S3	cervix:	n/a	chr10:93301734-93301741 chr10:93301494-93301508
11	RFX5	chr10:93300378-93300941	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr10:93300562-93301024	Hela-S3	cervix:	n/a	n/a
13	CHD2	chr10:93300359-93300935	Hela-S3	cervix:	n/a	n/a
14	ELK4	chr10:93300457-93300943	Hela-S3	cervix:	n/a	chr10:93300530-93300541
15	TFAP2C	chr10:93300352-93300957	Hela-S3	cervix:	n/a	n/a
16	MAFK	chr10:93300465-93300861	Hela-S3	cervix:	n/a	n/a
17	ZNF143	chr10:93300550-93300923	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr10:93300457-93300939	Hela-S3	cervix:	n/a	n/a
19	NFIC	chr10:93300280-93300895	SK-N-SH	brain:	n/a	n/a
20	RAD21	chr10:93300404-93300934	Hela-S3	cervix:	n/a	n/a
21	BATF	chr10:93300306-93300690	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:93300489-93300943	Hela-S3	cervix:	n/a	n/a
23	MXI1	chr10:93300489-93300956	Hela-S3	cervix:	n/a	n/a
24	RCOR1	chr10:93300414-93301594	Hela-S3	cervix:	n/a	n/a
25	TFAP2A	chr10:93300310-93300956	Hela-S3	cervix:	n/a	chr10:93300629-93300644
26	JUND	chr10:93300419-93300860	Hela-S3	cervix:	n/a	n/a
27	TBP	chr10:93300386-93300936	Hela-S3	cervix:	n/a	n/a
28	NFYB	chr10:93300504-93300768	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr10:93300332-93300919	Hela-S3	cervix:	n/a	n/a
30	EP300	chr10:93300359-93300662	SK-N-SH_RA	brain:	n/a	n/a
31	USF2	chr10:93300277-93300857	Hela-S3	cervix:	n/a	n/a
32	EP300	chr10:93300391-93300725	SK-N-SH_RA	brain:	n/a	n/a
33	POLR2A	chr10:93300559-93301932	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr10:93300396-93300947	Hela-S3	cervix:	n/a	n/a
35	SMC3	chr10:93300354-93301046	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
RPS27P1	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10881918	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10881919	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11186608	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186610	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11186611	0.83[EUR][1000 genomes]
rs12246270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12255223	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12256369	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12260868	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4933660	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4933661	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4933662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4933663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55753810	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55785441	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068979	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72819225	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93296600-93300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:93296600-93302000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:93297000-93301200	Weak transcription	Osteobl	bone
5	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
7	chr10:93297200-93300800	Weak transcription	Fetal Brain Male	brain
8	chr10:93297200-93300800	Weak transcription	NHLF	lung
9	chr10:93297200-93301400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:93297200-93302000	Weak transcription	Fetal Kidney	kidney
11	chr10:93297600-93301800	Weak transcription	Ovary	ovary
12	chr10:93298400-93301200	Weak transcription	Liver	Liver
13	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:93300000-93302800	Enhancers	Hela-S3	cervix
15	chr10:93300000-93304200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
17	chr10:93300200-93300800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr10:93300200-93301000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:93300200-93301200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:93300200-93302200	Enhancers	GM12878-XiMat	blood
21	chr10:93300400-93300800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93300400-93301000	ZNF genes & repeats	Aorta	Aorta
23	chr10:93300400-93301000	Enhancers	HMEC	breast
24	chr10:93300400-93301600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:93300400-93302200	Enhancers	Fetal Stomach	stomach
26	chr10:93300600-93301000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:93300600-93301200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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