Variant report

Variant	rs11186611
Chromosome Location	chr10:93309675-93309676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10881918	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10881919	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11186608	0.80[AMR][1000 genomes]
rs12246270	0.83[EUR][1000 genomes]
rs12246543	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12255223	0.84[EUR][1000 genomes]
rs12256369	0.84[EUR][1000 genomes]
rs12260868	0.83[EUR][1000 genomes]
rs4933659	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4933660	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4933661	0.84[EUR][1000 genomes]
rs4933662	0.84[EUR][1000 genomes]
rs4933663	0.84[EUR][1000 genomes]
rs56007503	0.83[EUR][1000 genomes]
rs7068979	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
4	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
6	chr10:93302400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:93302600-93312000	Weak transcription	NHLF	lung
8	chr10:93305800-93311400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:93306400-93312200	Weak transcription	Pancreas	Pancrea
10	chr10:93308000-93311600	Weak transcription	K562	blood
11	chr10:93308200-93310200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:93308600-93311000	Weak transcription	Fetal Lung	lung
13	chr10:93308600-93312200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:93309000-93310400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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