Variant report

Variant	rs7068979
Chromosome Location	chr10:93303294-93303295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10881918	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881919	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881923	0.81[ASN][1000 genomes]
rs11186608	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11186610	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186611	0.84[EUR][1000 genomes]
rs11186613	0.81[ASN][1000 genomes]
rs12241797	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12246270	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12246543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255223	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256369	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256726	0.81[ASN][1000 genomes]
rs12260868	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12260905	0.81[ASN][1000 genomes]
rs12263117	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12268133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.81[ASN][1000 genomes]
rs1411120	0.81[ASN][1000 genomes]
rs1411121	0.81[ASN][1000 genomes]
rs17106760	0.81[ASN][1000 genomes]
rs2094710	0.81[ASN][1000 genomes]
rs4933659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933660	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933661	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933662	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933663	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933665	0.81[ASN][1000 genomes]
rs4933666	0.81[ASN][1000 genomes]
rs4933667	0.81[ASN][1000 genomes]
rs4933668	0.81[ASN][1000 genomes]
rs4933669	0.81[ASN][1000 genomes]
rs55753810	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55785441	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56007503	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56198147	0.81[ASN][1000 genomes]
rs59997744	0.81[ASN][1000 genomes]
rs7074115	0.81[ASN][1000 genomes]
rs716361	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs72819225	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819249	0.81[ASN][1000 genomes]
rs72819252	0.81[ASN][1000 genomes]
rs7477129	0.81[ASN][1000 genomes]
rs7895083	0.81[ASN][1000 genomes]
rs7908831	0.81[ASN][1000 genomes]
rs7910891	1.00[CHB][hapmap]
rs928118	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7068979	MARCH5	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
4	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93300000-93304200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
7	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
8	chr10:93302400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:93302600-93308000	Weak transcription	Fetal Brain Male	brain
10	chr10:93302600-93312000	Weak transcription	NHLF	lung
11	chr10:93302800-93304600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:93302800-93305400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:93302800-93307800	Weak transcription	Hela-S3	cervix
14	chr10:93303200-93303400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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