Variant report

Variant	rs1411120
Chromosome Location	chr10:93325112-93325113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93325037..93327659-chr10:93375294..93378275,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10881918	0.81[ASN][1000 genomes]
rs10881919	0.81[ASN][1000 genomes]
rs10881923	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186608	0.82[GIH][hapmap]
rs11186610	0.81[ASN][1000 genomes]
rs11186613	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs12253464	0.84[CEU][hapmap]
rs12255223	0.81[ASN][1000 genomes]
rs12256369	0.81[ASN][1000 genomes]
rs12256726	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260905	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263117	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268133	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411121	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106760	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094710	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs4933660	0.81[ASN][1000 genomes]
rs4933661	0.81[ASN][1000 genomes]
rs4933662	0.81[ASN][1000 genomes]
rs4933663	0.81[ASN][1000 genomes]
rs4933665	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933666	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933667	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933668	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933669	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198147	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997744	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068979	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs7074115	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819252	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895083	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908831	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910891	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7911125	0.91[ASN][1000 genomes]
rs928118	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93325600	Weak transcription	Gastric	stomach
2	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:93320600-93325800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr10:93321600-93327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:93322400-93326200	Enhancers	Fetal Heart	heart
6	chr10:93322600-93325400	Enhancers	Fetal Intestine Small	intestine
7	chr10:93322600-93325600	Enhancers	Psoas Muscle	Psoas
8	chr10:93322600-93325800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:93322800-93325600	Enhancers	Fetal Intestine Large	intestine
10	chr10:93322800-93328000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:93323200-93325600	Weak transcription	Right Atrium	heart
12	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
13	chr10:93323400-93334600	Weak transcription	Pancreas	Pancrea
14	chr10:93323600-93325400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:93323600-93326200	Weak transcription	HepG2	liver
16	chr10:93323800-93331000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93324000-93325400	Enhancers	K562	blood
18	chr10:93324000-93325800	Enhancers	Fetal Muscle Leg	muscle
19	chr10:93324200-93325200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:93324400-93325400	Weak transcription	Left Ventricle	heart
21	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
22	chr10:93324600-93327200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:93324600-93327200	Weak transcription	NHEK	skin
24	chr10:93325000-93325200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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