Variant report

Variant	rs17106760
Chromosome Location	chr10:93323535-93323536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93320978..93323661-chr10:93390295..93392458,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10881918	0.81[ASN][1000 genomes]
rs10881919	0.81[ASN][1000 genomes]
rs10881923	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186610	0.81[ASN][1000 genomes]
rs11186613	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12253464	0.85[CEU][hapmap]
rs12255223	0.81[ASN][1000 genomes]
rs12256369	0.81[ASN][1000 genomes]
rs12256726	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260905	0.89[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263117	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268133	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411120	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411121	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094710	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4933660	0.81[ASN][1000 genomes]
rs4933661	0.81[ASN][1000 genomes]
rs4933662	0.81[ASN][1000 genomes]
rs4933663	0.81[ASN][1000 genomes]
rs4933665	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933666	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933667	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933668	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933669	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198147	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997744	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068979	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7074115	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819249	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819252	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477129	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895083	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908831	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910891	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7911125	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs928118	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93325600	Weak transcription	Gastric	stomach
2	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:93317200-93324000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:93320600-93325800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:93321600-93327200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:93322400-93323800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93322400-93324200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:93322400-93326200	Enhancers	Fetal Heart	heart
9	chr10:93322600-93323600	Enhancers	HepG2	liver
10	chr10:93322600-93324400	Enhancers	Aorta	Aorta
11	chr10:93322600-93325400	Enhancers	Fetal Intestine Small	intestine
12	chr10:93322600-93325600	Enhancers	Psoas Muscle	Psoas
13	chr10:93322600-93325800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:93322800-93324200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:93322800-93325600	Enhancers	Fetal Intestine Large	intestine
16	chr10:93322800-93328000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:93323000-93323600	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:93323000-93324400	Enhancers	Left Ventricle	heart
19	chr10:93323200-93323600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:93323200-93324000	Enhancers	Colon Smooth Muscle	Colon
21	chr10:93323200-93325600	Weak transcription	Right Atrium	heart
22	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
23	chr10:93323400-93334600	Weak transcription	Pancreas	Pancrea

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