Variant report

Variant	rs11186613
Chromosome Location	chr10:93317712-93317713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93317213..93320903-chr10:93391428..93394572,3	MCF-7	breast:
2	chr10:93315882..93318453-chr10:93320289..93322933,2	MCF-7	breast:
3	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
4	chr10:93316526..93318307-chr10:93400895..93403108,2	MCF-7	breast:
5	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10881918	0.81[ASN][1000 genomes]
rs10881919	0.81[ASN][1000 genomes]
rs10881923	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186610	0.81[ASN][1000 genomes]
rs12241797	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	0.81[ASN][1000 genomes]
rs12255223	0.81[ASN][1000 genomes]
rs12256369	0.81[ASN][1000 genomes]
rs12256726	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260905	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263117	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268133	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411120	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411121	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106760	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094710	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	0.81[ASN][1000 genomes]
rs4933660	0.81[ASN][1000 genomes]
rs4933661	0.81[ASN][1000 genomes]
rs4933662	0.81[ASN][1000 genomes]
rs4933663	0.81[ASN][1000 genomes]
rs4933665	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933666	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933667	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933668	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933669	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198147	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997744	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068979	0.81[ASN][1000 genomes]
rs7074115	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716361	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819249	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819252	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477129	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895083	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908831	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910891	0.91[ASN][1000 genomes]
rs7911125	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs928118	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine
2	chr10:93312000-93320800	Enhancers	Fetal Intestine Large	intestine
3	chr10:93312000-93321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:93312200-93318600	Enhancers	Fetal Heart	heart
5	chr10:93312600-93320000	Enhancers	Liver	Liver
6	chr10:93314800-93318200	Enhancers	Fetal Lung	lung
7	chr10:93314800-93321600	Enhancers	Stomach Mucosa	stomach
8	chr10:93315200-93317800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:93315200-93321000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:93315200-93321200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93315200-93321200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:93315200-93322600	Weak transcription	Aorta	Aorta
13	chr10:93315200-93325600	Weak transcription	Gastric	stomach
14	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:93315400-93323000	Weak transcription	Pancreas	Pancrea
16	chr10:93316000-93318400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr10:93316000-93320600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:93316200-93318000	Enhancers	Fetal Stomach	stomach
19	chr10:93316400-93318000	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:93316400-93319000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:93316400-93321000	Weak transcription	Esophagus	oesophagus
22	chr10:93316600-93318000	Enhancers	NHDF-Ad	bronchial
23	chr10:93316600-93318400	Enhancers	Duodenum Mucosa	Duodenum
24	chr10:93316600-93320800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:93316600-93323200	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:93316800-93318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:93316800-93318000	Enhancers	GM12878-XiMat	blood
28	chr10:93316800-93318200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:93317000-93318200	Enhancers	Adipose Nuclei	Adipose
30	chr10:93317000-93318800	Weak transcription	Psoas Muscle	Psoas
31	chr10:93317200-93322600	Weak transcription	Right Atrium	heart
32	chr10:93317200-93323000	Weak transcription	Left Ventricle	heart
33	chr10:93317200-93324000	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:93317400-93320600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:93317400-93320600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:93317600-93318200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr10:93317600-93318200	Enhancers	HSMMtube	muscle
38	chr10:93317600-93319400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:93317600-93320400	Enhancers	HepG2	liver
40	chr10:93317600-93320800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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