Variant report

Variant	rs12260905
Chromosome Location	chr10:93314712-93314713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93309163..93311774-chr10:93314390..93315926,2	MCF-7	breast:
2	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
3	chr10:93312317..93316991-chr10:93389052..93393840,6	MCF-7	breast:
4	chr10:93310787..93313296-chr10:93313678..93315496,2	K562	blood:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10881918	0.81[ASN][1000 genomes]
rs10881919	0.81[ASN][1000 genomes]
rs10881923	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186610	0.81[ASN][1000 genomes]
rs11186613	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241797	0.88[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	0.81[ASN][1000 genomes]
rs12253464	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs12255223	0.81[ASN][1000 genomes]
rs12256369	0.81[ASN][1000 genomes]
rs12256726	1.00[ASN][1000 genomes]
rs12263117	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268133	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411120	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411121	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106760	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094710	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	0.81[ASN][1000 genomes]
rs4933660	0.81[ASN][1000 genomes]
rs4933661	0.81[ASN][1000 genomes]
rs4933662	0.81[ASN][1000 genomes]
rs4933663	0.81[ASN][1000 genomes]
rs4933665	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933666	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933667	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933668	1.00[ASN][1000 genomes]
rs4933669	1.00[ASN][1000 genomes]
rs56198147	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997744	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068979	0.81[ASN][1000 genomes]
rs7074115	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716361	0.89[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819249	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819252	1.00[ASN][1000 genomes]
rs7477129	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895083	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904550	0.80[EUR][1000 genomes]
rs7908831	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910891	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7911125	0.91[ASN][1000 genomes]
rs928118	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
2	chr10:93311600-93316400	Enhancers	HepG2	liver
3	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine
4	chr10:93312000-93317000	Weak transcription	K562	blood
5	chr10:93312000-93320800	Enhancers	Fetal Intestine Large	intestine
6	chr10:93312000-93321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:93312200-93315000	Weak transcription	Colonic Mucosa	Colon
8	chr10:93312200-93316200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:93312200-93316200	Weak transcription	A549	lung
10	chr10:93312200-93316600	Weak transcription	Osteobl	bone
11	chr10:93312200-93318600	Enhancers	Fetal Heart	heart
12	chr10:93312400-93314800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:93312400-93316400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:93312600-93316000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:93312600-93316200	Weak transcription	Psoas Muscle	Psoas
16	chr10:93312600-93320000	Enhancers	Liver	Liver
17	chr10:93312800-93316400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:93312800-93316400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:93313000-93314800	Weak transcription	Fetal Lung	lung
20	chr10:93313000-93314800	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:93313000-93315200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:93313600-93314800	Weak transcription	Stomach Mucosa	stomach
23	chr10:93313800-93316200	Enhancers	Hela-S3	cervix
24	chr10:93314000-93316000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:93314000-93316400	Enhancers	Esophagus	oesophagus
26	chr10:93314000-93316800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:93314400-93315000	Enhancers	NHEK	skin
28	chr10:93314400-93315200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:93314400-93315200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr10:93314400-93315200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:93314400-93315200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr10:93314400-93316000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:93314400-93316200	Enhancers	Duodenum Mucosa	Duodenum
34	chr10:93314400-93316200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:93314400-93316600	Enhancers	HMEC	breast
36	chr10:93314600-93314800	Enhancers	Right Atrium	heart
37	chr10:93314600-93315000	Active TSS	Spleen	Spleen
38	chr10:93314600-93315200	Enhancers	Fetal Muscle Trunk	muscle
39	chr10:93314600-93315200	Enhancers	Fetal Stomach	stomach
40	chr10:93314600-93315200	Enhancers	Gastric	stomach
41	chr10:93314600-93315200	Enhancers	Left Ventricle	heart
42	chr10:93314600-93315400	Enhancers	Pancreas	Pancrea
43	chr10:93314600-93316000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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