Variant report

Variant	rs10881923
Chromosome Location	chr10:93328786-93328787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93327358..93329492-chr10:93329757..93331419,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10881918	0.81[ASN][1000 genomes]
rs10881919	0.81[ASN][1000 genomes]
rs11186610	0.81[ASN][1000 genomes]
rs11186613	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241797	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246543	0.81[ASN][1000 genomes]
rs12255223	0.81[ASN][1000 genomes]
rs12256369	0.81[ASN][1000 genomes]
rs12256726	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260905	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263117	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268133	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411120	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411121	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106760	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094710	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933659	0.81[ASN][1000 genomes]
rs4933660	0.81[ASN][1000 genomes]
rs4933661	0.81[ASN][1000 genomes]
rs4933662	0.81[ASN][1000 genomes]
rs4933663	0.81[ASN][1000 genomes]
rs4933665	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933666	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933667	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933668	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933669	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198147	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997744	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068979	0.81[ASN][1000 genomes]
rs7074115	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716361	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819249	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72819252	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7477129	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895083	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908831	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910891	0.91[ASN][1000 genomes]
rs7911125	0.91[ASN][1000 genomes]
rs928118	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93315200-93335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:93323200-93338000	Weak transcription	HSMMtube	muscle
3	chr10:93323400-93334600	Weak transcription	Pancreas	Pancrea
4	chr10:93323800-93331000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
6	chr10:93325400-93329000	Weak transcription	K562	blood
7	chr10:93325600-93330200	Weak transcription	Psoas Muscle	Psoas
8	chr10:93325800-93334800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:93326200-93330000	Weak transcription	Fetal Heart	heart
10	chr10:93326200-93334200	Weak transcription	Left Ventricle	heart
11	chr10:93326400-93330000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:93326600-93329000	Weak transcription	HepG2	liver
13	chr10:93327200-93329600	Enhancers	NHEK	skin
14	chr10:93327800-93329000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:93327800-93335600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93328400-93335400	Weak transcription	HMEC	breast
18	chr10:93328600-93328800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:93328600-93328800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:93328600-93332200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:93328600-93332600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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