Variant report

Variant	rs7910891
Chromosome Location	chr10:93312446-93312447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93312245..93313115-chr10:93387596..93388162,3	MCF-7	breast:
2	chr10:93311257..93312872-chr10:93394985..93396104,5	MCF-7	breast:
3	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
4	chr10:93311805..93313050-chr10:93387452..93388202,3	MCF-7	breast:
5	chr10:93057770..93058312-chr10:93311725..93312552,2	MCF-7	breast:
6	chr10:93310787..93313296-chr10:93313678..93315496,2	K562	blood:
7	chr10:93312317..93316991-chr10:93389052..93393840,6	MCF-7	breast:
8	chr10:93311332..93312699-chr10:93453654..93454623,6	MCF-7	breast:
9	chr10:93311883..93312872-chr10:93393286..93394075,2	MCF-7	breast:
10	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
11	chr10:93252741..93253543-chr10:93312278..93313081,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10881923	0.91[ASN][1000 genomes]
rs11186613	0.91[ASN][1000 genomes]
rs12241797	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12246543	1.00[CHB][hapmap]
rs12256726	0.91[ASN][1000 genomes]
rs12260905	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12263117	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12268133	1.00[CHB][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1411120	0.91[ASN][1000 genomes]
rs1411121	0.91[ASN][1000 genomes]
rs17106760	0.91[ASN][1000 genomes]
rs2094710	0.91[ASN][1000 genomes]
rs4933659	1.00[CHB][hapmap]
rs4933665	0.91[ASN][1000 genomes]
rs4933666	0.91[ASN][1000 genomes]
rs4933667	0.91[ASN][1000 genomes]
rs4933668	0.91[ASN][1000 genomes]
rs4933669	0.91[ASN][1000 genomes]
rs56198147	0.91[ASN][1000 genomes]
rs59997744	0.91[ASN][1000 genomes]
rs7068979	1.00[CHB][hapmap]
rs7074115	0.91[ASN][1000 genomes]
rs716361	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs72819249	0.91[ASN][1000 genomes]
rs72819252	0.91[ASN][1000 genomes]
rs7477129	0.91[ASN][1000 genomes]
rs7895083	0.91[ASN][1000 genomes]
rs7908831	0.91[ASN][1000 genomes]
rs7911125	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928118	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
2	chr10:93311400-93312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:93311400-93312800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:93311400-93312800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:93311400-93312800	Enhancers	Ovary	ovary
6	chr10:93311400-93313000	Enhancers	Hela-S3	cervix
7	chr10:93311400-93313400	Enhancers	Fetal Stomach	stomach
8	chr10:93311400-93313600	Enhancers	Stomach Mucosa	stomach
9	chr10:93311400-93314400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:93311600-93312600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:93311600-93312800	Flanking Active TSS	Fetal Lung	lung
12	chr10:93311600-93312800	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:93311600-93313000	Enhancers	Fetal Muscle Leg	muscle
14	chr10:93311600-93316400	Enhancers	HepG2	liver
15	chr10:93311600-93321000	Enhancers	Fetal Intestine Small	intestine
16	chr10:93311800-93312600	Flanking Active TSS	Liver	Liver
17	chr10:93311800-93312600	Active TSS	Brain Anterior Caudate	brain
18	chr10:93311800-93312600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr10:93311800-93312600	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr10:93311800-93312600	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr10:93311800-93313000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:93311800-93313000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr10:93312000-93312600	Active TSS	Brain Angular Gyrus	brain
24	chr10:93312000-93312600	Active TSS	Brain Hippocampus Middle	brain
25	chr10:93312000-93312800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:93312000-93312800	Active TSS	Stomach Smooth Muscle	stomach
27	chr10:93312000-93317000	Weak transcription	K562	blood
28	chr10:93312000-93320800	Enhancers	Fetal Intestine Large	intestine
29	chr10:93312000-93321000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:93312200-93312600	Weak transcription	Fetal Kidney	kidney
31	chr10:93312200-93312600	Enhancers	Psoas Muscle	Psoas
32	chr10:93312200-93313600	Enhancers	Pancreas	Pancrea
33	chr10:93312200-93314400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:93312200-93314600	Weak transcription	Left Ventricle	heart
35	chr10:93312200-93315000	Weak transcription	Colonic Mucosa	Colon
36	chr10:93312200-93316200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:93312200-93316200	Weak transcription	A549	lung
38	chr10:93312200-93316600	Weak transcription	Osteobl	bone
39	chr10:93312200-93318600	Enhancers	Fetal Heart	heart
40	chr10:93312400-93313000	Enhancers	Gastric	stomach
41	chr10:93312400-93314600	Weak transcription	Right Atrium	heart
42	chr10:93312400-93314800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:93312400-93316400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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