Variant report

Variant	rs11186608
Chromosome Location	chr10:93300327-93300328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GTF2F1	chr10:93300320-93300964	Hela-S3	cervix:	n/a	n/a
2	TCF12	chr10:93300232-93300857	SK-N-SH	brain:	n/a	chr10:93300259-93300267
3	MAZ	chr10:93300313-93300864	Hela-S3	cervix:	n/a	n/a
4	TCF7L2	chr10:93300324-93302257	Hela-S3	cervix:	n/a	chr10:93301734-93301741 chr10:93301494-93301508
5	NFIC	chr10:93300280-93300895	SK-N-SH	brain:	n/a	n/a
6	BATF	chr10:93300306-93300690	GM12878	blood:	n/a	n/a
7	TFAP2A	chr10:93300310-93300956	Hela-S3	cervix:	n/a	chr10:93300629-93300644
8	USF2	chr10:93300277-93300857	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
RPS27P1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10881918	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10881919	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11186610	0.86[EUR][1000 genomes]
rs11186611	0.80[AMR][1000 genomes]
rs12246270	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12246543	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12255223	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12256369	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12260868	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12268133	0.85[GIH][hapmap]
rs4933659	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933660	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933661	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933662	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933663	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55753810	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55785441	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007503	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068979	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs716361	0.82[GIH][hapmap]
rs72819225	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186608	MARCH5	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93296600-93300400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:93296600-93300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:93296600-93302000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:93296800-93300400	Weak transcription	Aorta	Aorta
6	chr10:93297000-93301200	Weak transcription	Osteobl	bone
7	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
9	chr10:93297200-93300800	Weak transcription	Fetal Brain Male	brain
10	chr10:93297200-93300800	Weak transcription	NHLF	lung
11	chr10:93297200-93301400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:93297200-93302000	Weak transcription	Fetal Kidney	kidney
13	chr10:93297400-93300400	Weak transcription	Fetal Stomach	stomach
14	chr10:93297600-93301800	Weak transcription	Ovary	ovary
15	chr10:93298400-93301200	Weak transcription	Liver	Liver
16	chr10:93299400-93300600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:93300000-93302800	Enhancers	Hela-S3	cervix
19	chr10:93300000-93304200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
21	chr10:93300200-93300800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr10:93300200-93301000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:93300200-93301200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:93300200-93302200	Enhancers	GM12878-XiMat	blood

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