Variant report

Variant	rs72826822
Chromosome Location	chr6:14771388-14771389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14761733..14764383-chr6:14771146..14773076,2	K562	blood:
2	chr6:14731280..14734259-chr6:14769117..14771517,2	MCF-7	breast:
3	chr6:14768705..14773334-chr6:14774992..14778664,5	K562	blood:
4	chr6:14713107..14715250-chr6:14771155..14774025,2	K562	blood:
5	chr6:14766318..14768956-chr6:14771278..14773593,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11755508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11757399	1.00[ASN][1000 genomes]
rs60777043	1.00[ASN][1000 genomes]
rs61234694	1.00[ASN][1000 genomes]
rs72826824	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826828	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826834	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:14768200-14771800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:14768200-14772400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:14768800-14772400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14768800-14775600	Weak transcription	Gastric	stomach
8	chr6:14769800-14771400	Enhancers	K562	blood
9	chr6:14769800-14772000	Enhancers	Fetal Thymus	thymus
10	chr6:14770000-14771600	Enhancers	NHLF	lung
11	chr6:14770200-14771400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:14770200-14771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:14770400-14771400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:14770400-14771400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:14770400-14771400	Enhancers	Adipose Nuclei	Adipose
16	chr6:14770400-14771400	Enhancers	Fetal Heart	heart
17	chr6:14770400-14771400	Enhancers	Right Ventricle	heart
18	chr6:14770400-14771600	Enhancers	NHDF-Ad	bronchial
19	chr6:14770400-14772000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:14770600-14771400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:14770600-14771400	Enhancers	Left Ventricle	heart
22	chr6:14770600-14771400	Enhancers	Ovary	ovary
23	chr6:14770600-14771400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:14770600-14771400	Enhancers	NH-A	brain
25	chr6:14770800-14771400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:14770800-14771400	Enhancers	Fetal Stomach	stomach
27	chr6:14770800-14771400	Enhancers	Stomach Mucosa	stomach
28	chr6:14771000-14771400	Enhancers	Right Atrium	heart
29	chr6:14771000-14771400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:14771000-14771400	Enhancers	A549	lung
31	chr6:14771200-14771400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:14771200-14771400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr6:14771200-14771800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:14771200-14772200	Enhancers	Placenta	Placenta

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