Variant report

Variant	rs11755508
Chromosome Location	chr6:14780424-14780425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14778863..14781243-chr6:15107030..15109161,2	K562	blood:
2	chr6:14705101..14707570-chr6:14777917..14780503,3	K562	blood:
3	chr6:14776558..14780459-chr6:14780811..14783861,5	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11757399	0.92[ASN][1000 genomes]
rs60777043	0.92[ASN][1000 genomes]
rs61234694	0.92[ASN][1000 genomes]
rs72826822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826824	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826828	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826834	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14772800-14783800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:14775600-14790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:14778800-14781600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:14778800-14782000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:14778800-14782200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:14778800-14782400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:14778800-14783800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:14779000-14781800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:14779000-14781800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:14779000-14782200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:14779000-14783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:14779000-14784600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:14779000-14784600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:14779200-14781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:14779200-14782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:14779200-14785000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:14779400-14782200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:14779800-14781800	Enhancers	Fetal Thymus	thymus
20	chr6:14780000-14781200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:14780000-14782800	Enhancers	K562	blood
22	chr6:14780400-14781200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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