Variant report

Variant	rs72826834
Chromosome Location	chr6:14784799-14784800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14783331..14786327-chr6:14787187..14789673,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11755508	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757399	0.92[ASN][1000 genomes]
rs60777043	0.92[ASN][1000 genomes]
rs61234694	0.92[ASN][1000 genomes]
rs72826822	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826824	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826825	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826828	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826837	0.84[AFR][1000 genomes]
rs768543	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:14775600-14790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:14779200-14785000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:14783800-14785200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:14783800-14786000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:14783800-14788400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:14784400-14784800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:14784400-14784800	Weak transcription	Placenta	Placenta
9	chr6:14784400-14785000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:14784400-14785400	Genic enhancers	Fetal Thymus	thymus
11	chr6:14784400-14789800	Enhancers	Thymus	Thymus
12	chr6:14784600-14784800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:14784600-14784800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:14784600-14785000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:14784600-14785000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:14784600-14785000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:14784600-14785000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:14784600-14785000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:14784600-14785000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:14784600-14785000	Enhancers	Primary T cells from cord blood	blood
21	chr6:14784600-14785000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:14784600-14785000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:14784600-14785000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:14784600-14785000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:14784600-14785000	Enhancers	NHEK	skin
26	chr6:14784600-14785200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:14784600-14785200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:14784600-14785600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:14784600-14785800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:14784600-14785800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:14784600-14786000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:14784600-14786000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:14784600-14786400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:14784600-14786600	Enhancers	Fetal Lung	lung

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