Variant report

Variant	rs768543
Chromosome Location	chr6:14792476-14792477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14788518..14793706-chr6:14794732..14798301,6	K562	blood:
2	chr6:14782718..14784387-chr6:14791933..14793560,2	K562	blood:
3	chr6:14787652..14790932-chr6:14791608..14794437,3	K562	blood:
4	chr6:14790824..14794391-chr6:14796656..14800219,3	MCF-7	breast:
5	chr6:14788518..14794395-chr6:14794732..14800573,9	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72826825	0.81[EUR][1000 genomes]
rs72826828	0.81[EUR][1000 genomes]
rs72826834	0.84[AFR][1000 genomes]
rs72826837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14787600-14792800	Enhancers	Fetal Lung	lung
2	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:14789000-14792800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:14789000-14798600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:14789200-14792600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:14790600-14796800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:14790800-14792800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:14790800-14802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:14791000-14793000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:14791000-14798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:14791200-14793000	Enhancers	Colon Smooth Muscle	Colon
12	chr6:14791400-14792600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:14791400-14793000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:14791400-14802600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:14791600-14792800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:14791600-14792800	Enhancers	Fetal Stomach	stomach
17	chr6:14791600-14793200	Enhancers	NHDF-Ad	bronchial
18	chr6:14791800-14792800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr6:14791800-14793000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:14791800-14793400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:14791800-14797800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:14792000-14796600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:14792000-14797200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:14792000-14797800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:14792200-14792600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:14792200-14792600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:14792200-14793200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:14792400-14793000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:14792400-14793200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:14792400-14793200	Enhancers	Fetal Intestine Large	intestine
31	chr6:14792400-14793200	Enhancers	Fetal Intestine Small	intestine
32	chr6:14792400-14793200	Enhancers	Rectal Smooth Muscle	rectum
33	chr6:14792400-14793200	Enhancers	Small Intestine	intestine
34	chr6:14792400-14793200	Enhancers	K562	blood
35	chr6:14792400-14793400	Enhancers	H9 Cell Line	embryonic stem cell

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