Variant report

Variant	rs72826837
Chromosome Location	chr6:14802351-14802352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14801951..14804468-chr6:14805275..14807028,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72826834	0.84[AFR][1000 genomes]
rs768543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:14790800-14802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:14791400-14802600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:14793600-14803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:14798000-14804800	Weak transcription	Right Atrium	heart
6	chr6:14798600-14803800	Weak transcription	NHEK	skin
7	chr6:14798800-14802600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:14798800-14802600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:14798800-14804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:14799000-14802600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:14799000-14803800	Weak transcription	Placenta	Placenta
12	chr6:14799000-14804800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:14799200-14802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:14799200-14803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:14799200-14803000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:14799200-14804200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:14799600-14803000	Weak transcription	Dnd41	blood
18	chr6:14800400-14804800	Weak transcription	Left Ventricle	heart
19	chr6:14800600-14802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:14800600-14804800	Weak transcription	Brain Germinal Matrix	brain
21	chr6:14800600-14805200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:14800800-14802600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:14800800-14804000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:14800800-14804000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:14800800-14804400	Weak transcription	Fetal Intestine Small	intestine
26	chr6:14800800-14804600	Weak transcription	Brain Anterior Caudate	brain
27	chr6:14800800-14804600	Weak transcription	Fetal Intestine Large	intestine
28	chr6:14800800-14804800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:14800800-14804800	Weak transcription	Stomach Mucosa	stomach
30	chr6:14801000-14802600	Weak transcription	Fetal Lung	lung
31	chr6:14801200-14802600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr6:14801200-14804000	Weak transcription	Brain Substantia Nigra	brain
33	chr6:14801200-14804000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:14801200-14804400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:14801200-14805000	Weak transcription	Liver	Liver
36	chr6:14801400-14802800	Weak transcription	Adipose Nuclei	Adipose
37	chr6:14801400-14804200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:14802000-14802400	Weak transcription	Fetal Brain Male	brain
39	chr6:14802000-14805600	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links