Variant report

Variant	rs72826824
Chromosome Location	chr6:14772668-14772669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14761733..14764383-chr6:14771146..14773076,2	K562	blood:
2	chr6:14768705..14773334-chr6:14774992..14778664,5	K562	blood:
3	chr6:14713107..14715250-chr6:14771155..14774025,2	K562	blood:
4	chr6:14765789..14768188-chr6:14772033..14773790,2	MCF-7	breast:
5	chr6:14736385..14738922-chr6:14772601..14775464,2	K562	blood:
6	chr6:14766318..14768956-chr6:14771278..14773593,2	K562	blood:
7	chr6:14772273..14773924-chr6:15207044..15208560,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11755508	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11757399	1.00[ASN][1000 genomes]
rs60777043	1.00[ASN][1000 genomes]
rs61234694	1.00[ASN][1000 genomes]
rs72826822	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826825	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72826828	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72826834	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14763800-14777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:14768000-14785200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:14768800-14775600	Weak transcription	Gastric	stomach
4	chr6:14771400-14775400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:14771800-14772800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:14771800-14773000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:14771800-14773000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:14772000-14772800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:14772000-14772800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:14772000-14777800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:14772400-14772800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:14772400-14772800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:14772400-14772800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:14772400-14772800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:14772400-14772800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:14772400-14772800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:14772400-14772800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:14772400-14772800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:14772400-14772800	Enhancers	A549	lung
20	chr6:14772400-14772800	Enhancers	K562	blood
21	chr6:14772600-14772800	Enhancers	Placenta	Placenta
22	chr6:14772600-14773400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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