Variant report

Variant	rs72853149
Chromosome Location	chr2:30664456-30664457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72853155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853177	0.89[AFR][1000 genomes]
rs72853183	0.84[AFR][1000 genomes]
rs72856612	0.82[AFR][1000 genomes]
rs72856616	0.84[AFR][1000 genomes]
rs72856621	0.84[AFR][1000 genomes]
rs72856627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72856629	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72856655	1.00[AMR][1000 genomes]
rs72863013	1.00[AMR][1000 genomes]
rs7563318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30658200-30665600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:30661600-30669400	Weak transcription	Primary B cells from cord blood	blood
3	chr2:30661800-30665400	Weak transcription	K562	blood
4	chr2:30663000-30669400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:30663200-30669400	Weak transcription	Thymus	Thymus
6	chr2:30663200-30669600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:30663600-30669000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr2:30663600-30669000	Weak transcription	Fetal Heart	heart
9	chr2:30663600-30669400	Weak transcription	Primary T cells from cord blood	blood
10	chr2:30663800-30669400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:30664200-30666400	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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