Variant report

Variant	rs72853155
Chromosome Location	chr2:30668343-30668344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:30668002-30668404	HepG2	liver:	n/a	n/a
2	MYC	chr2:30668182-30668354	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:30666695..30668837-chr2:30882273..30884825,2	K562	blood:
2	chr2:30662772..30665115-chr2:30666031..30669960,4	K562	blood:
3	chr2:30666329..30668432-chr2:30685565..30687906,2	K562	blood:

Variant related genes	Relation type
LCLAT1	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72853149	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853166	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72853177	0.86[AFR][1000 genomes]
rs72853183	0.91[AFR][1000 genomes]
rs72856612	0.88[AFR][1000 genomes]
rs72856616	0.91[AFR][1000 genomes]
rs72856621	0.91[AFR][1000 genomes]
rs72856627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72856629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72856655	1.00[AMR][1000 genomes]
rs72863013	1.00[AMR][1000 genomes]
rs7563318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30661600-30669400	Weak transcription	Primary B cells from cord blood	blood
2	chr2:30663000-30669400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:30663200-30669400	Weak transcription	Thymus	Thymus
4	chr2:30663200-30669600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:30663600-30669000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:30663600-30669000	Weak transcription	Fetal Heart	heart
7	chr2:30663600-30669400	Weak transcription	Primary T cells from cord blood	blood
8	chr2:30663800-30669400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr2:30666200-30668800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:30666600-30668600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr2:30666600-30668600	Enhancers	Adipose Nuclei	Adipose
12	chr2:30666600-30669400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:30666600-30669400	Weak transcription	A549	lung
14	chr2:30666800-30669400	Weak transcription	K562	blood
15	chr2:30666800-30669800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:30667000-30669600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:30667600-30669200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr2:30667800-30669400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:30667800-30669400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:30667800-30669400	Weak transcription	Fetal Lung	lung
21	chr2:30667800-30669400	Weak transcription	NHDF-Ad	bronchial
22	chr2:30668000-30669400	Weak transcription	Fetal Intestine Large	intestine
23	chr2:30668200-30669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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