Variant report
| Variant | rs72864881 |
|---|---|
| Chromosome Location | chr4:81653606-81653607 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:81652068..81654710-chr4:81662005..81664580,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1038530 | 0.83[EUR][1000 genomes] |
| rs1038531 | 0.83[EUR][1000 genomes] |
| rs12650380 | 0.83[EUR][1000 genomes] |
| rs1352077 | 0.83[EUR][1000 genomes] |
| rs1486021 | 0.83[EUR][1000 genomes] |
| rs1486030 | 0.90[EUR][1000 genomes] |
| rs2867782 | 0.83[EUR][1000 genomes] |
| rs329402 | 0.92[EUR][1000 genomes] |
| rs329403 | 0.90[EUR][1000 genomes] |
| rs34362887 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs396273 | 0.92[EUR][1000 genomes] |
| rs4146323 | 0.83[EUR][1000 genomes] |
| rs444023 | 0.92[EUR][1000 genomes] |
| rs444680 | 0.90[EUR][1000 genomes] |
| rs4693062 | 0.83[EUR][1000 genomes] |
| rs4693510 | 0.82[EUR][1000 genomes] |
| rs4693531 | 0.83[EUR][1000 genomes] |
| rs544526 | 0.92[EUR][1000 genomes] |
| rs72864895 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72879935 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72880000 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72881533 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73829109 | 0.85[EUR][1000 genomes] |
| rs7668590 | 0.92[EUR][1000 genomes] |
| rs7675185 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7696162 | 0.83[EUR][1000 genomes] |
| rs923178 | 0.83[EUR][1000 genomes] |
| rs971728 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002776 | chr4:81480374-81802614 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv537154 | chr4:81480374-81802614 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3518601 | chr4:81523238-81831941 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3518602 | chr4:81523354-81831976 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:81652600-81653800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
