Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1038530	0.82[EUR][1000 genomes]
rs1038531	0.82[EUR][1000 genomes]
rs12650380	0.82[EUR][1000 genomes]
rs1352077	0.82[EUR][1000 genomes]
rs1486021	0.82[EUR][1000 genomes]
rs1486030	0.89[EUR][1000 genomes]
rs2867782	0.82[EUR][1000 genomes]
rs329402	0.90[EUR][1000 genomes]
rs329403	0.89[EUR][1000 genomes]
rs34362887	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs396273	0.90[EUR][1000 genomes]
rs4146323	0.82[EUR][1000 genomes]
rs444023	0.90[EUR][1000 genomes]
rs444680	0.89[EUR][1000 genomes]
rs4693062	0.82[EUR][1000 genomes]
rs4693510	0.80[EUR][1000 genomes]
rs4693531	0.82[EUR][1000 genomes]
rs544526	0.90[EUR][1000 genomes]
rs72864881	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72864895	0.88[EUR][1000 genomes]
rs72879935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880000	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72881533	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73829109	0.83[EUR][1000 genomes]
rs7668590	0.90[EUR][1000 genomes]
rs7696162	0.82[EUR][1000 genomes]
rs923178	0.82[EUR][1000 genomes]
rs971728	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869805	chr4:81707298-81734666	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7675185	PTGER2	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81707400-81711200	Enhancers	Fetal Lung	lung

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