Variant report

Variant	rs72876559
Chromosome Location	chr3:45902475-45902476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs35423527	1.00[AMR][1000 genomes]
rs6782398	1.00[AMR][1000 genomes]
rs6782429	1.00[AMR][1000 genomes]
rs72876563	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883072	1.00[AMR][1000 genomes]
rs72883074	1.00[AMR][1000 genomes]
rs72883076	1.00[AMR][1000 genomes]
rs72883078	1.00[AMR][1000 genomes]
rs72883080	1.00[AMR][1000 genomes]
rs72884909	1.00[AMR][1000 genomes]
rs72884914	1.00[AMR][1000 genomes]
rs72884918	1.00[AMR][1000 genomes]
rs72890672	1.00[AMR][1000 genomes]
rs7653195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45890000-45907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:45891800-45905200	Weak transcription	Psoas Muscle	Psoas
3	chr3:45894600-45906200	Genic enhancers	Dnd41	blood
4	chr3:45896600-45902600	Weak transcription	Thymus	Thymus
5	chr3:45899200-45902800	Enhancers	Liver	Liver
6	chr3:45901600-45904200	Enhancers	Fetal Intestine Large	intestine
7	chr3:45901600-45904200	Enhancers	Fetal Intestine Small	intestine
8	chr3:45902000-45903800	Enhancers	Fetal Thymus	thymus
9	chr3:45902200-45902800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:45902200-45902800	Enhancers	Stomach Mucosa	stomach
11	chr3:45902200-45903200	Bivalent Enhancer	K562	blood
12	chr3:45902200-45903400	Enhancers	Primary T cells from cord blood	blood
13	chr3:45902200-45903600	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:45902200-45903600	Flanking Active TSS	GM12878-XiMat	blood
15	chr3:45902400-45902800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:45902400-45902800	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr3:45902400-45903200	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:45902400-45903200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:45902400-45903600	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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