Variant report

Variant	rs72883080
Chromosome Location	chr3:45915988-45915989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35423527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065025	1.00[AFR][1000 genomes]
rs6782398	1.00[AMR][1000 genomes]
rs6782429	1.00[AMR][1000 genomes]
rs72876559	1.00[AMR][1000 genomes]
rs72876563	1.00[AMR][1000 genomes]
rs72876570	1.00[AMR][1000 genomes]
rs72883072	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883074	1.00[AMR][1000 genomes]
rs72883076	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7653195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45912400-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:45913800-45916000	Weak transcription	K562	blood
3	chr3:45913800-45917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:45914200-45917600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:45914400-45922200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:45914600-45918600	Genic enhancers	Fetal Thymus	thymus
7	chr3:45914800-45924000	Enhancers	Thymus	Thymus
8	chr3:45915200-45916600	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr3:45915400-45916000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:45915800-45917200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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