Variant report

Variant	rs72876563
Chromosome Location	chr3:45904892-45904893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs35423527	1.00[AMR][1000 genomes]
rs6782398	1.00[AMR][1000 genomes]
rs6782429	1.00[AMR][1000 genomes]
rs72876559	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883072	1.00[AMR][1000 genomes]
rs72883074	1.00[AMR][1000 genomes]
rs72883076	1.00[AMR][1000 genomes]
rs72883078	1.00[AMR][1000 genomes]
rs72883080	1.00[AMR][1000 genomes]
rs72884909	1.00[AMR][1000 genomes]
rs72884914	1.00[AMR][1000 genomes]
rs72884918	1.00[AMR][1000 genomes]
rs72890672	1.00[AMR][1000 genomes]
rs7653195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45890000-45907400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:45891800-45905200	Weak transcription	Psoas Muscle	Psoas
3	chr3:45894600-45906200	Genic enhancers	Dnd41	blood
4	chr3:45902600-45910200	Weak transcription	Gastric	stomach
5	chr3:45902800-45906000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:45902800-45906400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:45903800-45905400	Bivalent Enhancer	GM12878-XiMat	blood
8	chr3:45903800-45905600	Genic enhancers	Fetal Thymus	thymus
9	chr3:45904200-45905000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:45904600-45905600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:45904800-45905400	ZNF genes & repeats	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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