Variant report

Variant	rs72883076
Chromosome Location	chr3:45913798-45913799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45911887..45914556-chr3:45925465..45927685,2	K562	blood:
2	chr3:45908244..45910273-chr3:45911912..45913834,2	K562	blood:
3	chr3:45908212..45911820-chr3:45911912..45916177,5	K562	blood:

Variant related genes	Relation type
ENSG00000236930	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35423527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065025	0.93[AFR][1000 genomes]
rs6782398	1.00[AMR][1000 genomes]
rs6782429	1.00[AMR][1000 genomes]
rs72876559	1.00[AMR][1000 genomes]
rs72876563	1.00[AMR][1000 genomes]
rs72876570	1.00[AMR][1000 genomes]
rs72883072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883074	1.00[AMR][1000 genomes]
rs72883078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884914	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7653195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45909800-45914400	Enhancers	Primary T cells from cord blood	blood
2	chr3:45910400-45913800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:45912000-45914400	Enhancers	GM12878-XiMat	blood
4	chr3:45912200-45915000	Flanking Active TSS	Dnd41	blood
5	chr3:45912400-45922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:45912600-45913800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:45912800-45914400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:45913000-45913800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:45913200-45914200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:45913200-45914600	Flanking Active TSS	Fetal Thymus	thymus
11	chr3:45913400-45913800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:45913400-45913800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:45913400-45913800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:45913400-45913800	Enhancers	K562	blood
15	chr3:45913400-45914400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:45913400-45914400	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:45913400-45914800	Flanking Active TSS	Thymus	Thymus
18	chr3:45913600-45914000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:45913600-45914200	Enhancers	Primary B cells from cord blood	blood
20	chr3:45913600-45914200	Enhancers	Duodenum Mucosa	Duodenum
21	chr3:45913600-45914800	Enhancers	Primary hematopoietic stem cells	blood

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