Variant report
| Variant | rs72908929 |
|---|---|
| Chromosome Location | chr4:99905350-99905351 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99849409..99851226-chr4:99904228..99906643,2 | K562 | blood: | |
| 2 | chr4:99904805..99907417-chr4:99907702..99910047,2 | K562 | blood: | |
| 3 | chr4:99904019..99905829-chr4:99909025..99910567,2 | MCF-7 | breast: | |
| 4 | chr4:99903729..99905802-chr4:99917170..99919032,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265213 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
| ENSG00000151247 | Chromatin interaction |
| ENSG00000263923 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs17028338 | 0.87[AFR][1000 genomes] |
| rs17028347 | 0.89[AFR][1000 genomes] |
| rs17028378 | 0.91[AFR][1000 genomes] |
| rs17028406 | 0.83[AFR][1000 genomes] |
| rs72908930 | 1.00[AFR][1000 genomes] |
| rs72908944 | 1.00[AFR][1000 genomes] |
| rs72908946 | 1.00[AFR][1000 genomes] |
| rs72908969 | 0.91[AFR][1000 genomes] |
| rs72908974 | 0.91[AFR][1000 genomes] |
| rs72908979 | 0.82[AFR][1000 genomes] |
| rs72908985 | 0.87[AFR][1000 genomes] |
| rs72908987 | 0.91[AFR][1000 genomes] |
| rs72909002 | 0.85[AFR][1000 genomes] |
| rs72910916 | 0.82[AFR][1000 genomes] |
| rs72910929 | 0.89[AFR][1000 genomes] |
| rs7678891 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99898400-99905600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
