Variant report

Variant	rs7678891
Chromosome Location	chr4:99903168-99903169
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17028338	0.87[AFR][1000 genomes]
rs17028347	0.89[AFR][1000 genomes]
rs17028378	0.91[AFR][1000 genomes]
rs17028406	0.83[AFR][1000 genomes]
rs72908929	1.00[AFR][1000 genomes]
rs72908930	1.00[AFR][1000 genomes]
rs72908944	1.00[AFR][1000 genomes]
rs72908946	1.00[AFR][1000 genomes]
rs72908969	0.91[AFR][1000 genomes]
rs72908974	0.91[AFR][1000 genomes]
rs72908979	0.82[AFR][1000 genomes]
rs72908985	0.87[AFR][1000 genomes]
rs72908987	0.91[AFR][1000 genomes]
rs72909002	0.85[AFR][1000 genomes]
rs72910916	0.82[AFR][1000 genomes]
rs72910929	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99898400-99905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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