Variant report

Variant	rs72908974
Chromosome Location	chr4:99935780-99935781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99934330..99936784-chr4:99941744..99945155,3	MCF-7	breast:
2	chr4:99915686..99917743-chr4:99934020..99937226,3	K562	blood:
3	chr4:99924940..99927322-chr4:99934155..99935780,2	K562	blood:
4	chr4:99915932..99918872-chr4:99933272..99936896,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265213	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000250496	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17028347	0.80[AFR][1000 genomes]
rs17028378	1.00[AFR][1000 genomes]
rs17028406	0.91[AFR][1000 genomes]
rs72908929	0.91[AFR][1000 genomes]
rs72908930	0.91[AFR][1000 genomes]
rs72908944	0.91[AFR][1000 genomes]
rs72908946	0.91[AFR][1000 genomes]
rs72908969	1.00[AFR][1000 genomes]
rs72908979	0.91[AFR][1000 genomes]
rs72908985	0.96[AFR][1000 genomes]
rs72908987	1.00[AFR][1000 genomes]
rs72909002	0.93[AFR][1000 genomes]
rs72910916	0.91[AFR][1000 genomes]
rs72910929	0.98[AFR][1000 genomes]
rs7678891	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99918200-99935800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:99918200-99938000	Weak transcription	NHDF-Ad	bronchial
3	chr4:99918600-99937800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:99918600-99938600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:99918800-99937800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:99919200-99940000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:99919200-99942000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:99920000-99937800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:99924200-99941600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:99924200-99943600	Weak transcription	Gastric	stomach
11	chr4:99924600-99942000	Weak transcription	Fetal Lung	lung
12	chr4:99925400-99940000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:99925600-99939800	Weak transcription	Thymus	Thymus
14	chr4:99925600-99941200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:99925600-99941200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:99925800-99938800	Weak transcription	Fetal Intestine Large	intestine
17	chr4:99928400-99941400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:99928600-99942400	Weak transcription	Esophagus	oesophagus
19	chr4:99929200-99940600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:99929200-99940800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:99929800-99935800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:99930200-99938000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr4:99930600-99941400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:99930600-99941400	Weak transcription	NHEK	skin
25	chr4:99931600-99971400	Weak transcription	Aorta	Aorta
26	chr4:99931800-99940600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:99932000-99940200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:99932400-99937400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:99932600-99937800	Weak transcription	Dnd41	blood
30	chr4:99932600-99969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:99933400-99936000	Weak transcription	Fetal Stomach	stomach
32	chr4:99933600-99938200	Weak transcription	Fetal Thymus	thymus
33	chr4:99933800-99935800	Weak transcription	Lung	lung
34	chr4:99933800-99937200	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr4:99934000-99938600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr4:99934000-99941600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:99934200-99935800	Weak transcription	Fetal Intestine Small	intestine
38	chr4:99934200-99941600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:99934600-99941200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:99934800-99935800	Weak transcription	Right Atrium	heart
41	chr4:99934800-99936000	Weak transcription	Left Ventricle	heart
42	chr4:99934800-99944800	Weak transcription	Small Intestine	intestine
43	chr4:99935000-99936400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr4:99935000-99938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:99935000-99941000	Weak transcription	HMEC	breast
46	chr4:99935000-99945400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:99935400-99935800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:99935400-99936200	Enhancers	Ovary	ovary
49	chr4:99935400-99936400	Strong transcription	Primary B cells from cord blood	blood
50	chr4:99935400-99938800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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