Variant report

Variant	rs72908985
Chromosome Location	chr4:99942109-99942110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99940234..99942578-chr4:99952966..99955722,2	K562	blood:
2	chr4:99919795..99924184-chr4:99939427..99943074,3	K562	blood:
3	chr4:99915704..99918928-chr4:99937972..99943367,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164024	Chromatin interaction
ENSG00000265213	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17028347	0.81[AFR][1000 genomes]
rs17028378	0.96[AFR][1000 genomes]
rs17028406	0.87[AFR][1000 genomes]
rs72908929	0.87[AFR][1000 genomes]
rs72908930	0.87[AFR][1000 genomes]
rs72908944	0.87[AFR][1000 genomes]
rs72908946	0.87[AFR][1000 genomes]
rs72908969	0.96[AFR][1000 genomes]
rs72908974	0.96[AFR][1000 genomes]
rs72908979	0.87[AFR][1000 genomes]
rs72908987	0.96[AFR][1000 genomes]
rs72909002	0.89[AFR][1000 genomes]
rs72910916	0.87[AFR][1000 genomes]
rs72910929	0.93[AFR][1000 genomes]
rs7678891	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99924200-99943600	Weak transcription	Gastric	stomach
2	chr4:99928600-99942400	Weak transcription	Esophagus	oesophagus
3	chr4:99931600-99971400	Weak transcription	Aorta	Aorta
4	chr4:99932600-99969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:99934800-99944800	Weak transcription	Small Intestine	intestine
6	chr4:99935000-99945400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:99935400-99945600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:99935600-99944400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr4:99936200-99942200	Weak transcription	Psoas Muscle	Psoas
10	chr4:99936200-99942400	Weak transcription	Lung	lung
11	chr4:99936800-99942400	Weak transcription	Right Atrium	heart
12	chr4:99937200-99943600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr4:99937600-99944400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:99937600-99966200	Weak transcription	HUVEC	blood vessel
15	chr4:99938200-99944400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:99938800-99944400	ZNF genes & repeats	Fetal Muscle Leg	muscle
17	chr4:99938800-99945600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:99939400-99944400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr4:99939600-99943400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr4:99939800-99942600	ZNF genes & repeats	Dnd41	blood
21	chr4:99939800-99943600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr4:99940000-99942800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:99940000-99944000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr4:99940200-99944000	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr4:99940600-99942200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:99940600-99942200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:99940600-99943200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr4:99940800-99942800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:99940800-99944000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
30	chr4:99940800-99944200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr4:99940800-99944400	ZNF genes & repeats	GM12878-XiMat	blood
32	chr4:99941000-99944200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:99941000-99944400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:99941000-99944400	ZNF genes & repeats	Fetal Thymus	thymus
35	chr4:99941200-99942600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:99941200-99942800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:99941200-99942800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
38	chr4:99941200-99943000	ZNF genes & repeats	HMEC	breast
39	chr4:99941400-99942400	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr4:99941400-99942600	ZNF genes & repeats	NHEK	skin
41	chr4:99941400-99943000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:99941400-99943000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr4:99941400-99943000	ZNF genes & repeats	Thymus	Thymus
44	chr4:99941400-99943200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:99941400-99943600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:99941400-99944000	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr4:99941400-99944200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:99941400-99944400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:99941400-99944400	ZNF genes & repeats	Fetal Stomach	stomach
50	chr4:99941600-99942200	Genic enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links