Variant report

Variant	rs72930838
Chromosome Location	chr3:67840501-67840502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:67644504..67645005-chr3:67840284..67841159,2	MCF-7	breast:
2	chr3:66988495..66989453-chr3:67840497..67841033,2	K562	blood:
3	chr3:67644010..67644919-chr3:67839779..67840998,5	MCF-7	breast:
4	chr3:67467097..67467666-chr3:67840213..67841048,2	MCF-7	breast:
5	chr3:67840274..67841142-chr3:67914118..67914816,4	MCF-7	breast:
6	chr3:67821892..67822812-chr3:67840239..67841219,2	K562	blood:
7	chr3:67435046..67435830-chr3:67840399..67841145,2	K562	blood:
8	chr3:67840426..67841246-chr3:68065943..68066794,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1870541	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56062840	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548776	1.00[ASN][1000 genomes]
rs66616930	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68070005	1.00[ASN][1000 genomes]
rs73093317	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73093343	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093357	1.00[ASN][1000 genomes]
rs73093360	1.00[ASN][1000 genomes]
rs898365	0.97[EUR][1000 genomes]
rs9309877	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812892	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820714	1.00[ASN][1000 genomes]
rs9823937	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857965	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv963516	chr3:67834282-67843336	ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67839200-67840600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:67839200-67840600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:67839800-67840600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:67840200-67840600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:67840200-67840600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:67840200-67841200	Enhancers	Primary T cells from cord blood	blood
7	chr3:67840200-67841200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:67840200-67841200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:67840400-67841200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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