Variant report

Variant	rs9857965
Chromosome Location	chr3:67847758-67847759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1870541	1.00[ASN][1000 genomes]
rs56062840	1.00[ASN][1000 genomes]
rs6548776	1.00[ASN][1000 genomes]
rs66616930	1.00[ASN][1000 genomes]
rs68070005	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930838	1.00[ASN][1000 genomes]
rs73093343	1.00[ASN][1000 genomes]
rs73093357	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093360	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309877	1.00[ASN][1000 genomes]
rs9812892	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9820714	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823937	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9841022	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67847200-67847800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:67847200-67848000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:67847200-67848000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:67847200-67848000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:67847400-67847800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:67847600-67849000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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