Variant report

Variant	rs72941326
Chromosome Location	chr6:106983481-106983482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106982665..106985601-chr6:106993025..106995759,2	MCF-7	breast:
2	chr6:106982668..106985044-chr6:106987673..106989483,2	K562	blood:
3	chr6:106972979..106975776-chr6:106983451..106985409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112297	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12523666	0.86[AFR][1000 genomes]
rs12525004	0.86[AFR][1000 genomes]
rs12526024	0.86[AFR][1000 genomes]
rs12528136	0.86[AFR][1000 genomes]
rs12528406	0.86[AFR][1000 genomes]
rs12529961	0.86[AFR][1000 genomes]
rs12530093	0.86[AFR][1000 genomes]
rs1676030	0.89[EUR][1000 genomes]
rs17067395	0.86[AFR][1000 genomes]
rs17067428	0.86[AFR][1000 genomes]
rs17495248	1.00[AFR][1000 genomes]
rs17495623	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17495678	0.87[EUR][1000 genomes]
rs17495742	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41292422	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41312800	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55904932	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs59962977	0.86[AFR][1000 genomes]
rs61741114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72939427	0.86[AFR][1000 genomes]
rs72939433	0.86[AFR][1000 genomes]
rs72939434	0.86[AFR][1000 genomes]
rs72939440	0.86[AFR][1000 genomes]
rs72941307	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72941373	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72943025	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72943042	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72943087	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72943092	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72943097	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72945007	0.86[AFR][1000 genomes]
rs72945008	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72945013	0.86[AFR][1000 genomes]
rs72945015	0.86[AFR][1000 genomes]
rs72945018	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72945026	0.86[AFR][1000 genomes]
rs72945029	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72945030	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72945035	0.86[AFR][1000 genomes]
rs72945036	0.86[AFR][1000 genomes]
rs72945040	0.86[AFR][1000 genomes]
rs72945045	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72945046	0.86[AFR][1000 genomes]
rs72945047	0.93[AMR][1000 genomes]
rs72945056	0.93[AMR][1000 genomes]
rs72945059	0.86[AFR][1000 genomes]
rs72945067	0.93[AMR][1000 genomes]
rs72945068	0.93[AMR][1000 genomes]
rs72945071	0.93[AMR][1000 genomes]
rs72945072	0.93[AMR][1000 genomes]
rs72945075	0.93[AMR][1000 genomes]
rs72945079	0.93[AMR][1000 genomes]
rs72945081	0.93[AMR][1000 genomes]
rs72945093	0.87[AMR][1000 genomes]
rs72945095	0.93[AMR][1000 genomes]
rs72945097	0.93[AMR][1000 genomes]
rs72945098	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv3407164	chr6:106982684-106985232	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv2481074	chr6:106982686-106984346	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3418513	chr6:106982959-106984957	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv6147	chr6:106983388-106984219	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2278880	chr6:106983439-106984156	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3356248	chr6:106983459-106984457	Genic enhancers Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106961000-107001400	Weak transcription	Gastric	stomach
2	chr6:106964800-106991000	Weak transcription	Spleen	Spleen
3	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
4	chr6:106970600-107022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:106973400-106985600	Weak transcription	Stomach Mucosa	stomach
6	chr6:106973600-106985800	Weak transcription	Thymus	Thymus
7	chr6:106973600-106986000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:106973600-106992800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:106976400-106986200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:106976600-106991400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:106977000-106986400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:106978800-106984200	Weak transcription	NH-A	brain
13	chr6:106978800-106985600	Weak transcription	Fetal Thymus	thymus
14	chr6:106978800-106993800	Weak transcription	NHLF	lung
15	chr6:106979000-107001400	Weak transcription	Pancreas	Pancrea
16	chr6:106979600-106984200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:106979600-106987200	Weak transcription	HepG2	liver
18	chr6:106980200-106984400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:106980800-106984400	Genic enhancers	HMEC	breast
20	chr6:106980800-106986200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:106980800-106986400	Strong transcription	Liver	Liver
22	chr6:106981200-106984600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:106981400-106988000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:106981600-106984600	Genic enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:106981600-106995600	Weak transcription	Colonic Mucosa	Colon
26	chr6:106981800-106983600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:106981800-106984000	Weak transcription	Fetal Intestine Small	intestine
28	chr6:106981800-106985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:106981800-106985600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:106981800-106985600	Weak transcription	Esophagus	oesophagus
31	chr6:106981800-106987800	Weak transcription	Lung	lung
32	chr6:106982200-106984200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:106982400-106984600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:106982400-106984800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:106982400-106984800	Genic enhancers	NHEK	skin
36	chr6:106982400-106986000	Weak transcription	Placenta	Placenta
37	chr6:106982400-106987400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:106982400-106987600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:106982400-106987800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:106982400-107000800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:106982600-106984000	Weak transcription	Primary T cells from cord blood	blood
42	chr6:106982600-106984000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:106982600-106984000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:106982600-106984000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:106982600-106984000	Weak transcription	NHDF-Ad	bronchial
46	chr6:106982600-106984200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:106982600-106984400	Strong transcription	Primary B cells from cord blood	blood
48	chr6:106982600-106984600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:106982600-106985600	Weak transcription	Fetal Intestine Large	intestine
50	chr6:106982600-106987200	Weak transcription	Hela-S3	cervix

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