Variant report

Variant	rs72945079
Chromosome Location	chr6:107071635-107071636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107071388..107073960-chr6:107125035..107126711,2	MCF-7	breast:
2	chr6:107069824..107071669-chr6:107079166..107080707,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1676030	0.85[EUR][1000 genomes]
rs17067443	0.83[AFR][1000 genomes]
rs41292422	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41312800	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55904932	0.88[AMR][1000 genomes]
rs58620450	0.83[AFR][1000 genomes]
rs61741114	0.93[AMR][1000 genomes]
rs72941307	0.86[AMR][1000 genomes]
rs72941326	0.93[AMR][1000 genomes]
rs72941373	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72943025	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72943042	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72943087	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72943092	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72943097	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945008	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945018	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945029	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945030	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945053	0.83[AFR][1000 genomes]
rs72945056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945093	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
9	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
10	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
12	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
14	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
15	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
16	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
19	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:107040000-107076600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:107040000-107076600	Weak transcription	Fetal Intestine Large	intestine
23	chr6:107040200-107076200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:107040200-107076400	Weak transcription	Brain Substantia Nigra	brain
25	chr6:107040200-107076600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:107040200-107076600	Weak transcription	Ovary	ovary
27	chr6:107045600-107076600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:107048600-107073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:107048600-107076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:107050600-107076200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:107051600-107076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:107053000-107076400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:107053000-107076800	Weak transcription	Esophagus	oesophagus
34	chr6:107053000-107076800	Weak transcription	Gastric	stomach
35	chr6:107053200-107076400	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:107054200-107076000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:107055400-107076000	Weak transcription	Hela-S3	cervix
38	chr6:107056400-107075800	Weak transcription	Placenta	Placenta
39	chr6:107057800-107076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:107059200-107075800	Weak transcription	Psoas Muscle	Psoas
41	chr6:107059600-107076400	Weak transcription	Fetal Heart	heart
42	chr6:107060000-107076400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:107062200-107076000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:107062600-107074200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:107063600-107076400	Weak transcription	HSMMtube	muscle
46	chr6:107064000-107076400	Weak transcription	Fetal Brain Female	brain
47	chr6:107064400-107076200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:107064600-107075800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:107065000-107073800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:107065400-107076400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links