Variant report

Variant	rs72945095
Chromosome Location	chr6:107079363-107079364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:107079252-107079544	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr6:107079326-107079462	MCF10A-Er-Src	breast:	n/a	n/a
3	MXI1	chr6:107079320-107079413	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107074696..107076514-chr6:107078215..107079891,2	K562	blood:
2	chr6:107069824..107071669-chr6:107079166..107080707,2	K562	blood:

Variant related genes	Relation type
RTN4IP1	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17067443	0.83[AFR][1000 genomes]
rs41292422	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41312800	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55904932	0.88[AMR][1000 genomes]
rs58620450	0.83[AFR][1000 genomes]
rs61741114	0.93[AMR][1000 genomes]
rs72941307	0.86[AMR][1000 genomes]
rs72941326	0.93[AMR][1000 genomes]
rs72941373	1.00[AMR][1000 genomes]
rs72943025	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72943042	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72943087	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72943092	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72943097	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72945008	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72945018	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945029	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945030	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945045	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945053	0.83[AFR][1000 genomes]
rs72945056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72945067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72945093	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72945097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72945098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107076200-107079400	Active TSS	K562	blood
2	chr6:107076200-107080600	Active TSS	GM12878-XiMat	blood
3	chr6:107078000-107084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:107078000-107090000	Weak transcription	Aorta	Aorta
5	chr6:107078200-107082400	Weak transcription	Lung	lung
6	chr6:107078200-107084800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:107078400-107079600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:107078400-107080000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:107078400-107080000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:107078400-107085000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:107078400-107090400	Weak transcription	HSMMtube	muscle
12	chr6:107078600-107079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:107078600-107079400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:107078600-107079400	Enhancers	HMEC	breast
15	chr6:107078600-107079600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:107078600-107079600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:107078600-107079600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:107078600-107079600	Enhancers	Osteobl	bone
19	chr6:107078600-107080000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:107078600-107080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:107078600-107084400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:107078600-107084400	Weak transcription	Left Ventricle	heart
23	chr6:107078600-107084400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:107078600-107084600	Weak transcription	Adipose Nuclei	Adipose
25	chr6:107078600-107084800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:107078600-107084800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:107078600-107084800	Weak transcription	Fetal Thymus	thymus
28	chr6:107078600-107084800	Weak transcription	Right Atrium	heart
29	chr6:107078600-107084800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:107078600-107084800	Weak transcription	Small Intestine	intestine
31	chr6:107078600-107085000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:107078600-107085000	Weak transcription	Liver	Liver
33	chr6:107078600-107085000	Weak transcription	Thymus	Thymus
34	chr6:107078600-107085200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:107078600-107085400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:107078600-107086000	Weak transcription	Primary T cells from cord blood	blood
37	chr6:107078600-107086400	Weak transcription	Psoas Muscle	Psoas
38	chr6:107078600-107086600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:107078600-107086600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:107078600-107087400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:107078600-107087800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:107078600-107088000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:107078600-107088000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:107078600-107088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:107078600-107089000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:107078600-107089000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:107078600-107089400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:107078600-107089600	Weak transcription	Fetal Intestine Small	intestine
49	chr6:107078600-107089800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:107078600-107090000	Weak transcription	Fetal Muscle Trunk	muscle

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