Variant report

Variant	rs72945093
Chromosome Location	chr6:107079130-107079131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107074696..107076514-chr6:107078215..107079891,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17067443	0.83[AFR][1000 genomes]
rs41292422	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41312800	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55904932	0.82[AMR][1000 genomes]
rs58620450	0.83[AFR][1000 genomes]
rs61741114	0.87[AMR][1000 genomes]
rs72941307	0.81[AMR][1000 genomes]
rs72941326	0.87[AMR][1000 genomes]
rs72941373	0.93[AMR][1000 genomes]
rs72943025	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72943042	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72943087	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72943092	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72943097	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72945008	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72945018	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945029	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945030	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945045	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945047	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945053	0.83[AFR][1000 genomes]
rs72945056	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72945067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945068	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945071	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945072	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945075	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945079	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945081	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72945095	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72945097	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72945098	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107076200-107079400	Active TSS	K562	blood
2	chr6:107076200-107080600	Active TSS	GM12878-XiMat	blood
3	chr6:107078000-107084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:107078000-107090000	Weak transcription	Aorta	Aorta
5	chr6:107078200-107082400	Weak transcription	Lung	lung
6	chr6:107078200-107084800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:107078400-107079200	Enhancers	Primary B cells from cord blood	blood
8	chr6:107078400-107079600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:107078400-107080000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:107078400-107080000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:107078400-107085000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:107078400-107090400	Weak transcription	HSMMtube	muscle
13	chr6:107078600-107079200	Weak transcription	NHDF-Ad	bronchial
14	chr6:107078600-107079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:107078600-107079400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:107078600-107079400	Enhancers	HMEC	breast
17	chr6:107078600-107079600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:107078600-107079600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:107078600-107079600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:107078600-107079600	Enhancers	Osteobl	bone
21	chr6:107078600-107080000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:107078600-107080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:107078600-107084400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:107078600-107084400	Weak transcription	Left Ventricle	heart
25	chr6:107078600-107084400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:107078600-107084600	Weak transcription	Adipose Nuclei	Adipose
27	chr6:107078600-107084800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:107078600-107084800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:107078600-107084800	Weak transcription	Fetal Thymus	thymus
30	chr6:107078600-107084800	Weak transcription	Right Atrium	heart
31	chr6:107078600-107084800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:107078600-107084800	Weak transcription	Small Intestine	intestine
33	chr6:107078600-107085000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:107078600-107085000	Weak transcription	Liver	Liver
35	chr6:107078600-107085000	Weak transcription	Thymus	Thymus
36	chr6:107078600-107085200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:107078600-107085400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:107078600-107086000	Weak transcription	Primary T cells from cord blood	blood
39	chr6:107078600-107086400	Weak transcription	Psoas Muscle	Psoas
40	chr6:107078600-107086600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:107078600-107086600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:107078600-107087400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:107078600-107087800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:107078600-107088000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:107078600-107088000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:107078600-107088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:107078600-107089000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:107078600-107089000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:107078600-107089400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:107078600-107089600	Weak transcription	Fetal Intestine Small	intestine

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