The 2.0 version of rSNPBase

Variant report

Variant rs72942089
Chromosome Location chr3:112337044-112337045
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:112282400-112340000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr3:112312600-112346200 Weak transcription Rectal Smooth Muscle rectum
3 chr3:112312600-112347200 Weak transcription Fetal Intestine Large intestine
4 chr3:112316200-112342800 Weak transcription Fetal Muscle Trunk muscle
5 chr3:112316600-112337600 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr3:112318000-112341800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr3:112322200-112337200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr3:112327800-112340600 Weak transcription Fetal Kidney kidney
9 chr3:112329600-112341800 Strong transcription HSMM muscle
10 chr3:112330200-112338400 Strong transcription HSMMtube muscle
11 chr3:112330400-112346800 Strong transcription NHLF lung
12 chr3:112331200-112351600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr3:112331400-112354800 Weak transcription Psoas Muscle Psoas
14 chr3:112331600-112337400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr3:112331600-112337800 Weak transcription HUVEC blood vessel
16 chr3:112331600-112338200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr3:112331600-112338400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr3:112332200-112337800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr3:112332600-112337600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr3:112332800-112337800 Strong transcription Adipose Nuclei Adipose
21 chr3:112332800-112339000 Strong transcription Placenta Amnion Placenta Amnion
22 chr3:112333400-112337600 Strong transcription Ovary ovary
23 chr3:112333400-112338000 Strong transcription Duodenum Smooth Muscle Duodenum
24 chr3:112333400-112338000 Strong transcription Stomach Smooth Muscle stomach
25 chr3:112333600-112337800 Strong transcription Colon Smooth Muscle Colon
26 chr3:112334000-112338400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr3:112334400-112337600 Weak transcription A549 lung
28 chr3:112335000-112337600 Weak transcription Brain Inferior Temporal Lobe brain
29 chr3:112335000-112340000 Weak transcription Aorta Aorta
30 chr3:112335200-112339800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr3:112335200-112340400 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr3:112335200-112342200 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr3:112335200-112345400 Weak transcription Fetal Muscle Leg muscle
34 chr3:112335600-112337800 Strong transcription Muscle Satellite Cultured Cells --
35 chr3:112335600-112337800 Strong transcription NH-A brain
36 chr3:112336000-112342000 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr3:112336200-112337400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr3:112336200-112337400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr3:112336200-112342000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr3:112336200-112347400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr3:112336200-112351600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr3:112336400-112337400 Strong transcription Osteobl bone
43 chr3:112336400-112337600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr3:112336400-112337800 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr3:112336400-112341200 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr3:112336400-112342000 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr3:112336400-112346800 Weak transcription Fetal Stomach stomach
48 chr3:112336600-112337800 Weak transcription NHDF-Ad bronchial
49 chr3:112336600-112351400 Weak transcription Fetal Lung lung
50 chr3:112336600-112355800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015