Variant report

Variant	rs72942032
Chromosome Location	chr3:112306822-112306823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112305089..112306971-chr3:112309621..112312159,2	MCF-7	breast:
2	chr3:112303825..112307196-chr3:112355847..112358748,3	MCF-7	breast:
3	chr3:112295927..112308019-chr3:112356650..112361561,36	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13070342	0.94[AFR][1000 genomes]
rs57937078	1.00[AMR][1000 genomes]
rs59090018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938420	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938422	1.00[AMR][1000 genomes]
rs72938432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938438	1.00[AMR][1000 genomes]
rs72938454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72940099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942080	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942089	1.00[AMR][1000 genomes]
rs72943904	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv591301	chr3:112252532-112332629	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112281800-112312000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:112281800-112315400	Weak transcription	Pancreas	Pancrea
3	chr3:112281800-112324200	Weak transcription	Spleen	Spleen
4	chr3:112281800-112325400	Weak transcription	Gastric	stomach
5	chr3:112282000-112312200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:112282000-112330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:112282000-112330600	Weak transcription	Esophagus	oesophagus
8	chr3:112282400-112307200	Weak transcription	Small Intestine	intestine
9	chr3:112282400-112312400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:112282400-112316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:112282400-112322800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:112282400-112324200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:112282400-112340000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:112283000-112316400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:112290400-112317400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:112290600-112315600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:112291600-112320600	Weak transcription	NHLF	lung
18	chr3:112293200-112315600	Weak transcription	NH-A	brain
19	chr3:112293200-112318000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:112295400-112311200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:112296600-112307000	Strong transcription	Liver	Liver
22	chr3:112296600-112309800	Strong transcription	Placenta	Placenta
23	chr3:112297200-112307400	Strong transcription	Fetal Thymus	thymus
24	chr3:112297800-112307000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr3:112297800-112309800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:112298600-112325200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:112298800-112335200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:112299200-112311000	Weak transcription	HUVEC	blood vessel
29	chr3:112299200-112311000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr3:112299200-112315000	Weak transcription	NHEK	skin
31	chr3:112299400-112307400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:112299400-112307400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:112299400-112309400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr3:112300200-112315800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:112300200-112317400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:112300200-112331000	Weak transcription	Lung	lung
37	chr3:112300200-112334000	Weak transcription	Fetal Stomach	stomach
38	chr3:112301200-112307200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:112301200-112311200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:112301600-112315600	Weak transcription	Stomach Mucosa	stomach
41	chr3:112301600-112316600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:112301800-112311600	Weak transcription	A549	lung
43	chr3:112302000-112309600	Strong transcription	Adipose Nuclei	Adipose
44	chr3:112302000-112313800	Weak transcription	Dnd41	blood
45	chr3:112302000-112317400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:112302200-112307000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:112302200-112307000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:112302600-112322800	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:112302800-112308800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr3:112302800-112324200	Weak transcription	Brain Inferior Temporal Lobe	brain

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