Variant report

Variant	rs72945949
Chromosome Location	chr2:116359293-116359294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10189544	1.00[AMR][1000 genomes]
rs1026097	1.00[AMR][1000 genomes]
rs1154727	1.00[AMR][1000 genomes]
rs11694627	1.00[AMR][1000 genomes]
rs12373737	1.00[AMR][1000 genomes]
rs12711826	1.00[AMR][1000 genomes]
rs13001120	1.00[AMR][1000 genomes]
rs1550987	1.00[AMR][1000 genomes]
rs1584402	1.00[AMR][1000 genomes]
rs4849405	1.00[AMR][1000 genomes]
rs59033152	1.00[AMR][1000 genomes]
rs72945935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945985	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945987	1.00[AMR][1000 genomes]
rs72947986	1.00[AMR][1000 genomes]
rs72947993	1.00[AMR][1000 genomes]
rs72947996	1.00[AMR][1000 genomes]
rs72961549	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3388257	chr2:116348771-116365419	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116353800-116364000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:116355000-116364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:116357800-116360000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:116358800-116365600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:116359000-116371000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:116359200-116361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:116359200-116361800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:116359200-116364800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:116359200-116365600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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