Variant report

Variant	rs12373737
Chromosome Location	chr2:116291197-116291198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10189544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1026097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1154727	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11694627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13001120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1448460	0.85[AFR][1000 genomes]
rs1550987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1584402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712001	0.85[AFR][1000 genomes]
rs1839134	0.85[AFR][1000 genomes]
rs1900747	0.85[AFR][1000 genomes]
rs4849405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59033152	1.00[AMR][1000 genomes]
rs72945935	1.00[AMR][1000 genomes]
rs72945949	1.00[AMR][1000 genomes]
rs72945973	1.00[AMR][1000 genomes]
rs72945985	1.00[AMR][1000 genomes]
rs72945987	1.00[AMR][1000 genomes]
rs72947986	1.00[AMR][1000 genomes]
rs72947993	1.00[AMR][1000 genomes]
rs72947996	1.00[AMR][1000 genomes]
rs72961549	1.00[AMR][1000 genomes]
rs843431	0.82[AFR][1000 genomes]
rs843439	0.82[AFR][1000 genomes]
rs843440	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116290400-116291200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:116290600-116291400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:116290600-116291400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:116290800-116291200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:116290800-116291400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:116290800-116291400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:116290800-116291600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:116290800-116291600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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