Variant report

Variant	rs1712001
Chromosome Location	chr2:116229639-116229640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10189544	0.82[AFR][1000 genomes]
rs1026097	0.82[AFR][1000 genomes]
rs1154727	0.82[AFR][1000 genomes]
rs11694627	0.85[AFR][1000 genomes]
rs12373737	0.85[AFR][1000 genomes]
rs12711826	0.82[AFR][1000 genomes]
rs13001120	0.85[AFR][1000 genomes]
rs1402447	0.90[AFR][1000 genomes]
rs1448460	1.00[AFR][1000 genomes]
rs1521073	0.86[AFR][1000 genomes]
rs1550987	0.82[AFR][1000 genomes]
rs1584402	0.97[AFR][1000 genomes]
rs1607913	0.85[AFR][1000 genomes]
rs1711999	0.86[AFR][1000 genomes]
rs1712003	0.85[AFR][1000 genomes]
rs1712013	0.85[AFR][1000 genomes]
rs1839134	1.00[AFR][1000 genomes]
rs1900747	1.00[AFR][1000 genomes]
rs2594828	0.93[AFR][1000 genomes]
rs4849405	0.85[AFR][1000 genomes]
rs7575073	0.83[AFR][1000 genomes]
rs843380	0.86[AFR][1000 genomes]
rs843386	0.86[AFR][1000 genomes]
rs843387	0.86[AFR][1000 genomes]
rs843389	0.86[AFR][1000 genomes]
rs843400	0.90[AFR][1000 genomes]
rs843410	0.90[AFR][1000 genomes]
rs843431	0.97[AFR][1000 genomes]
rs843438	0.84[AFR][1000 genomes]
rs843439	0.97[AFR][1000 genomes]
rs843440	0.97[AFR][1000 genomes]
rs844541	0.90[AFR][1000 genomes]
rs861492	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116219800-116232200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:116224400-116232200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:116229600-116230800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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