Variant report

Variant	rs843400
Chromosome Location	chr2:116184940-116184941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1402447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1448460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1521073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1584402	0.86[AFR][1000 genomes]
rs1607913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712001	0.90[AFR][1000 genomes]
rs1712003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1839134	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1900747	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594828	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60048252	1.00[AMR][1000 genomes]
rs72955579	1.00[AMR][1000 genomes]
rs72957740	1.00[AMR][1000 genomes]
rs72957749	1.00[AMR][1000 genomes]
rs72957771	1.00[AMR][1000 genomes]
rs72957776	1.00[AMR][1000 genomes]
rs72957779	1.00[AMR][1000 genomes]
rs72957790	1.00[AMR][1000 genomes]
rs72959707	1.00[AMR][1000 genomes]
rs72959746	1.00[AMR][1000 genomes]
rs72959748	1.00[AMR][1000 genomes]
rs7575073	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843431	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843440	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs861492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116183400-116185400	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr2:116184200-116185400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:116184200-116186400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:116184400-116185800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr2:116184600-116185200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:116184600-116185200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr2:116184600-116185400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr2:116184800-116185200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:116184800-116185200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:116184800-116186200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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