Variant report

Variant	rs72959748
Chromosome Location	chr2:116204167-116204168
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1402447	1.00[AMR][1000 genomes]
rs1448460	1.00[AMR][1000 genomes]
rs1521073	1.00[AMR][1000 genomes]
rs1607913	1.00[AMR][1000 genomes]
rs1711999	1.00[AMR][1000 genomes]
rs1712003	1.00[AMR][1000 genomes]
rs1712013	1.00[AMR][1000 genomes]
rs1839134	1.00[AMR][1000 genomes]
rs1900747	1.00[AMR][1000 genomes]
rs2594828	1.00[AMR][1000 genomes]
rs60048252	1.00[AMR][1000 genomes]
rs72955579	1.00[AMR][1000 genomes]
rs72957740	1.00[AMR][1000 genomes]
rs72957749	1.00[AMR][1000 genomes]
rs72957771	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957779	1.00[AMR][1000 genomes]
rs72957790	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959746	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7575073	1.00[AMR][1000 genomes]
rs843380	1.00[AMR][1000 genomes]
rs843386	1.00[AMR][1000 genomes]
rs843387	1.00[AMR][1000 genomes]
rs843389	1.00[AMR][1000 genomes]
rs843400	1.00[AMR][1000 genomes]
rs843410	1.00[AMR][1000 genomes]
rs843431	1.00[AMR][1000 genomes]
rs843438	1.00[AMR][1000 genomes]
rs843439	1.00[AMR][1000 genomes]
rs843440	1.00[AMR][1000 genomes]
rs844541	1.00[AMR][1000 genomes]
rs861492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116201600-116204600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr2:116201600-116205000	Weak transcription	Fetal Brain Male	brain
3	chr2:116202200-116205000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:116203800-116204400	Weak transcription	Pancreas	Pancrea
5	chr2:116204000-116204600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:116204000-116206400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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