Variant report

Variant	rs7575073
Chromosome Location	chr2:116183606-116183607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1402447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1448460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1521073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1584402	0.80[AFR][1000 genomes]
rs1607913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712001	0.83[AFR][1000 genomes]
rs1712003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1712013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1839134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1900747	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2594828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60048252	1.00[AMR][1000 genomes]
rs72955549	1.00[AMR][1000 genomes]
rs72955579	1.00[AMR][1000 genomes]
rs72957740	1.00[AMR][1000 genomes]
rs72957749	1.00[AMR][1000 genomes]
rs72957771	1.00[AMR][1000 genomes]
rs72957776	1.00[AMR][1000 genomes]
rs72957779	1.00[AMR][1000 genomes]
rs72957790	1.00[AMR][1000 genomes]
rs72959707	1.00[AMR][1000 genomes]
rs72959746	1.00[AMR][1000 genomes]
rs72959748	1.00[AMR][1000 genomes]
rs843380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843431	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843438	1.00[AMR][1000 genomes]
rs843439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs843440	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs844541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs861492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3460906	chr2:116183518-116184227	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
4	esv3460908	chr2:116183518-116184227	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116172400-116184600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:116173000-116184200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:116181000-116184800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:116182000-116184600	Weak transcription	Fetal Intestine Large	intestine
5	chr2:116183400-116185400	ZNF genes & repeats	Fetal Intestine Small	intestine

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