Variant report
Variant | rs843438 |
---|---|
Chromosome Location | chr2:116224999-116225000 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1402447 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1448460 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1521073 | 1.00[AMR][1000 genomes] |
rs1584402 | 0.81[AFR][1000 genomes] |
rs1607913 | 1.00[AMR][1000 genomes] |
rs1711999 | 1.00[AMR][1000 genomes] |
rs1712001 | 0.84[AFR][1000 genomes] |
rs1712003 | 1.00[AMR][1000 genomes] |
rs1712013 | 1.00[AMR][1000 genomes] |
rs1839134 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1900747 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2594828 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60048252 | 1.00[AMR][1000 genomes] |
rs72955579 | 1.00[AMR][1000 genomes] |
rs72957740 | 1.00[AMR][1000 genomes] |
rs72957749 | 1.00[AMR][1000 genomes] |
rs72957771 | 1.00[AMR][1000 genomes] |
rs72957776 | 1.00[AMR][1000 genomes] |
rs72957779 | 1.00[AMR][1000 genomes] |
rs72957790 | 1.00[AMR][1000 genomes] |
rs72959707 | 1.00[AMR][1000 genomes] |
rs72959746 | 1.00[AMR][1000 genomes] |
rs72959748 | 1.00[AMR][1000 genomes] |
rs7575073 | 1.00[AMR][1000 genomes] |
rs843380 | 1.00[AMR][1000 genomes] |
rs843386 | 1.00[AMR][1000 genomes] |
rs843387 | 1.00[AMR][1000 genomes] |
rs843389 | 1.00[AMR][1000 genomes] |
rs843400 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs843410 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs843431 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs843439 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs843440 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs844541 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs861492 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014859 | chr2:116196951-116938584 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv961498 | chr2:116224645-116226323 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:116219800-116232200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr2:116224400-116232200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
3 | chr2:116224600-116229400 | Weak transcription | Fetal Intestine Large | intestine |