Variant report
| Variant | rs4849405 |
|---|---|
| Chromosome Location | chr2:116293934-116293935 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10189544 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1026097 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1154727 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11694627 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12373737 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12711826 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13001120 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1448460 | 0.85[AFR][1000 genomes] |
| rs1550987 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1584402 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1712001 | 0.85[AFR][1000 genomes] |
| rs1839134 | 0.85[AFR][1000 genomes] |
| rs1900747 | 0.85[AFR][1000 genomes] |
| rs59033152 | 1.00[AMR][1000 genomes] |
| rs72945935 | 1.00[AMR][1000 genomes] |
| rs72945949 | 1.00[AMR][1000 genomes] |
| rs72945973 | 1.00[AMR][1000 genomes] |
| rs72945985 | 1.00[AMR][1000 genomes] |
| rs72945987 | 1.00[AMR][1000 genomes] |
| rs72947986 | 1.00[AMR][1000 genomes] |
| rs72947993 | 1.00[AMR][1000 genomes] |
| rs72947996 | 1.00[AMR][1000 genomes] |
| rs72961549 | 1.00[AMR][1000 genomes] |
| rs843431 | 0.95[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs843439 | 0.82[AFR][1000 genomes] |
| rs843440 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014859 | chr2:116196951-116938584 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116291600-116295400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
